MDAnalysis MDAnalysis

A Python package for the analysis of molecular dynamics simulations. Is an object-oriented Python library to analyze trajectories from molecular dynamics MD simulations in many popular formats. It can write most of these formats, too, together with atom selections. Suitable for visualization or native analysis tools. MDAnalysis allows one to read particle-based trajectories including individual coordinate frames such as biomolecules in the PDB format and access the atomic coordinates through NumPy.

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Jan Domański

I used to work as a scientific associate in D. Shaw Research, New York City. The aim was to predict small molecules that would bind to these pockets.

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PAGE TITLE

MDAnalysis MDAnalysis

DESCRIPTION

A Python package for the analysis of molecular dynamics simulations. Is an object-oriented Python library to analyze trajectories from molecular dynamics MD simulations in many popular formats. It can write most of these formats, too, together with atom selections. Suitable for visualization or native analysis tools. MDAnalysis allows one to read particle-based trajectories including individual coordinate frames such as biomolecules in the PDB format and access the atomic coordinates through NumPy.

CONTENT

This website had the following on the site, "A Python package for the analysis of molecular dynamics simulations." We analyzed that the web site said " Is an object-oriented Python library to analyze trajectories from molecular dynamics MD simulations in many popular formats." It also stated " It can write most of these formats, too, together with atom selections. Suitable for visualization or native analysis tools. MDAnalysis allows one to read particle-based trajectories including individual coordinate frames such as biomolecules in the PDB format and access the atomic coordinates through NumPy."

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